GetPrime | Tool name | GetPrime |
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| URL | http://updepla1srv1.epfl.ch/getprime/ |
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| Important features | 1. It a gene specific and transcript specific primer database.
2. Database covers 5 species i.e. Homo sapiens (97.5%), Mus musculus (97.9%), Caenorhabditis elegans (57.4%), Drosophila melanogaster (96.6%), Danio rerio (99.3%).
3. It is experimentally and in silico validated database. |
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| Citations | Carine Gubelmann, Alexandre Gattiker, Andreas Massouras, Korneel Hens, Fabrice David, Frederik Decouttere, Jacques Rougemont and Bart Deplancke: GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR. Database: The Journal of Biological Databases and Curation. 2011 Sep 14;2011: bar040. PubMed PMID: 21917859; PubMed Central PMCID: PMC3173022 |
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| Year of publication | 2011 |
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| Rank by usage frequency | 100 |
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| Comments | |
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| Function | Junction primers, Real time PCR, Primer Database |
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| Category | Online, Free |
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| Features | 1. Database holds primer sets that are transcript specific as well as gene specific.
2. Database covers 5 species i.e. Homo sapiens (97.5%), Mus musculus (97.9%), Caenorhabditis elegans (57.4%), Drosophila melanogaster (96.6%), Danio rerio (99.3%).
3. It is experimentally and in silico validated database.
4. It has automated primer specificty checking. User does not have to manually check primer specificty by using BLASTN link. |
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| Description | |
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